Install

Basic install

Install GPSeer from PyPI using pip.

> pip install gpseer

Dependencies

1. numpy: Python’s numerical array computation library.

2. pandas: Python’s DataFrame library.

3. tqdm: Progress bars in Python.

4. gpmap: Python API for storing and manipulating genotype-phenotype maps

5. epistasis: Python API for extracting and analyzing epistasis in genotype-phenotype maps

6. matplotlib: Python API for plotting.

7. requests: Python API for downloading data via HTTP.

Installing from source

Clone the gpseer repository from Github.

> git clone https://github.com/harmslab/gpseer
> cd gpseer
> pip install -e .

GPSeer Quick Start